_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-76
 Query name: gi|589268200|emb|CCG28019.1| glutathione peroxidase 1a [Oncorhynchus mykiss]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/196970468/tempfiles/temptarget.fasta
 Chromosome: CM007951.1:subseq_64647418,100864_ Strand: -
 Positions:
 -Exon 1  50640        50864
 -Exon 2  49991        50335

 Redox box: no

Query   MAGKIKKFYDFSAKLLSGDLLHFSSLKDKVVLIENVASLUGTTTRDYTQMNELHSQYSEKGLVVLGVPCNQFGHQ <---Intron---> ENCKNDEIL
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   304bp    > |||||||||
Target  MAGKIKKFYDFSAKLLSGDLLHFSSLKDKVVLIENVASLUGTTTRDYTQMNELHSQYSEKGLVVLGVPCNQFGHQ                ENCKNDEIL
        aggaaaattgttgatctggtcctttcagaggcagaggtctgaaaagtacaagcctcttgagcggcggctactgcc                gataaggac
        tcgataataatccattcgattatcctaaattttaatcctggcccgaacataatacaacaagttttgtcgaatgaa                aagaaaatt
        gtgaaggtcctataggtatgatcccagtatgttatggacaaaacgcctggcgctggttaggctttggcccgtctg                gttgttgcg
                                               *                                                            

Query   RSLKYIRPGNGFEPKFPLFEKMDVNGKDAHPLFVYLKDKLPFPSDDSMALMSDPKFIMWSPVCRNDVSWNFEKFLVSPDGDPYKRYSRRFLTSDIEADIK
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  RSLKYIRPGNGFEPKFPLFEKMDVNGKDAHPLFVYLKDKLPFPSDDSMALMSDPKFIMWSPVCRNDVSWNFEKFLVSPDGDPYKRYSRRFLTSDIEADIK
        atcataccgagtgcatcctgaaggagaggccttgtcagatctctggtagcaagcataatacgtaaggttatgatcgacgggctactaaatcaagagggaa
        gctaatgcgagtacatcttaatatagaacactttataaatctccaactcttgacatttggctggaatcgataatttgcagacaagagggttcgatacata
        gcggtctcatctgcatattgggtgtggtcccgtgtcgtagaccctccgccgcccgccggctccgtcccgctagcgctttattcgcccagcgctctgattg
                                                                                                            

Query   ELLNVK
        ||||||
Target  ELLNVK
        gccaga
        attata
        gactga
              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 254 ; UGA-SECIS: 704

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007951.1:subseq_64647418,100864_ Strand = - Positions = 49736 - 49665
 Found by:  Infernal (score=35.42) Covels (score=24.8)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -12.69

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---....{[[((({(((((((......-..........)))))))})))]]}..--....))))))...
 target  GCUCUUUAC---UGAAUGAAGACAUUCCUUAAAACC-UUUGUUGUGAGGGGAGUUUCUGAUAA--AGAUGUAAAGUCC
                         ****          ^^^                        ****